PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1757_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 345aa    MW: 37829.7 Da    PI: 9.686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1757_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13172217454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  RrC1757_p5 172 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 217
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.111168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.89E-14171221No hitNo description
SuperFamilySSF474595.37E-18171240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18172238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MWINDPIGVP EQGNGAPSSS SQLFAKSIQF EHGGSSSTIT ENPNPDPTPS PVHSQIQNPK  60
LSNNNFSREL NFSTSSTTLV KPRPGEILSF GDEGKRSSVN PDPSSYSGQT QFENKRKKSI  120
GQSDHDKVLT FGTGGGESDH SDLEASVVKE IPEKRPKKRG RKPANGREEP LNHVEAERQR  180
REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKAK VTKTESEKTQ VKTQLEEVKM  240
ELAGRKASAG GGDLSSSCSM TAIKPVGMEI EVKIIGWDAM IRVESSKRNH PAARLMSALM  300
DLELEVNHAS MSVVNDLMIQ QATVKMGFRI YTQEQLRASL ISKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161KRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238030.0EF423803.1 Brassica oleracea var. gemmifera MYC mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735805.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLM4D1290.0M4D129_BRARP; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein